PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco020034.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family LBD
Protein Properties Length: 231aa    MW: 24497.1 Da    PI: 8.8823
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco020034.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26091.31.2e-282103197
       DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                  +C++C+vlr++C+++C+++ ++     p++q++++ +++k++G++ +l+l+++ p + r+ +++sl+yeA+ r+ dPv G+vg+++++++ql+q+++e
  Aco020034.1   2 SCNGCRVLRKGCSAGCAIRSCLqwirsPNSQANATVFLAKFYGRAGLLNLISSCPLHLRSSIFQSLLYEACGRVLDPVCGSVGLLWSGNWQLCQAAVE 99 
                  6***********************************************************************************************99 PP

       DUF260  94 lall 97 
                  ++l 
  Aco020034.1 100 AVLK 103
                  9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.3211107IPR004883Lateral organ boundaries, LOB
PfamPF031953.8E-232101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSAGCAIR SCLQWIRSPN SQANATVFLA KFYGRAGLLN LISSCPLHLR  60
SSIFQSLLYE ACGRVLDPVC GSVGLLWSGN WQLCQAAVEA VLKGVPITRT PATLSGGGVP  120
PLKTYDIRHV AKNTDRLGAA AKSRSRFKRS GSARRKPEVE LVDWTEFHPA EPSHESDRES  180
DSKGGPVGSA DGSHVSQAEP IRAKLVLGVE ENCGVALDLS LSLLTAVQPA *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0025385e-38AP002538.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0408F06.
GenBankAP0149575e-38AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankFP1005025e-38FP100502.1 Phyllostachys edulis cDNA clone: bphyem111j02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009396373.14e-77PREDICTED: LOB domain-containing protein 41-like
SwissprotQ9M8863e-69LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A061ED633e-75A0A061ED63_THECC; LOB domain-containing protein 42
STRINGGLYMA19G06280.11e-73(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123537127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.12e-70LOB domain-containing protein 41